STRINGSTRING
POPTR_0003s10280.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s10280.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s10280.1Predicted protein (1299 aa)    
Predicted Functional Partners:
POPTR_0015s01950.1
Predicted protein (2228 aa)
     
        0.737
POPTR_0012s01860.1
Predicted protein (2230 aa)
     
        0.737
POPTR_0006s03660.1
Predicted protein (1628 aa)
     
        0.703
POPTR_0016s03630.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE46_POPTR] (1472 aa)
     
        0.695
POPTR_0010s25090.1
Calcium dependent protein kinase 1 [source-UniProtKB/TrEMBL;Acc-B9HVI0_POPTR] (579 aa)
     
   
  0.441
POPTR_0009s07330.1
Calcium dependent protein kinase 25 [source-UniProtKB/TrEMBL;Acc-B9HNH4_POPTR] (525 aa)
     
   
  0.441
POPTR_0008s01530.1
Predicted protein (579 aa)
     
   
  0.441
POPTR_0004s21710.1
Calcium dependent protein kinase 5 [source-UniProtKB/TrEMBL;Acc-B9HPN3_POPTR] (560 aa)
     
   
  0.441
POPTR_0003s13380.1
Calcium dependent protein kinase 22 [source-UniProtKB/TrEMBL;Acc-B9GX38_POPTR] (523 aa)
     
   
  0.441
POPTR_0001s28150.1
Calcium dependent protein kinase 17 [source-UniProtKB/TrEMBL;Acc-B9GG73_POPTR] (505 aa)
     
   
  0.441
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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