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CHR926 protein (Populus trichocarpa) - STRING interaction network
"CHR926" - Chromodomain-helicase-DNA-binding family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR926Chromodomain-helicase-DNA-binding family protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9GVF7_POPTR] (2327 aa)    
Predicted Functional Partners:
POPTR_0008s08040.1
Uncharacterized protein (2052 aa)
     
   
  0.883
CHR952
Uncharacterized protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9MZ67_POPTR] (1159 aa)
     
 
  0.762
POPTR_0019s08970.1
Uncharacterized protein (545 aa)
           
  0.755
HDA909
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9I3D0_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (440 aa)
     
 
  0.753
HDA908
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9IEX4_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (467 aa)
     
 
  0.751
HDA902
Histone deacetylasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFZ1_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (499 aa)
     
 
  0.747
HDA903
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9MZ37_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (501 aa)
     
 
  0.747
HDA904
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9GGG8_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (429 aa)
     
 
  0.747
CHR954
MORPHEUS MOLECULE family protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9N465_POPTR] (1437 aa)
     
 
  0.747
POPTR_0893s00200.1
annotation not available (156 aa)
     
 
  0.739
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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