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POPTR_0003s11650.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s11650.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s11650.1Predicted protein (442 aa)    
Predicted Functional Partners:
POPTR_0010s24480.1
Predicted protein (299 aa)
           
  0.508
POPTR_0008s02160.1
Predicted protein (296 aa)
           
  0.508
POPTR_0014s14630.1
Annotation not available (180 aa)
           
  0.426
POPTR_0014s14620.1
Predicted protein; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (415 aa)
           
  0.426
POPTR_0014s09370.1
Predicted protein (467 aa)
           
  0.426
POPTR_0013s15000.1
Predicted protein (461 aa)
           
  0.426
POPTR_0010s23520.1
Predicted protein (411 aa)
           
  0.426
POPTR_0010s02820.1
Predicted protein (346 aa)
           
  0.426
POPTR_0008s03320.1
Predicted protein (412 aa)
           
  0.426
POPTR_0004s20070.1
Predicted protein (136 aa)
           
  0.426
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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