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HCP901 protein (Populus trichocarpa) - STRING interaction network
"HCP901" - Histone deacetylase complex protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCP901Histone deacetylase complex protein [source-UniProtKB/TrEMBL;Acc-B9GW42_POPTR] (160 aa)    
Predicted Functional Partners:
POPTR_0007s06040.1
Uncharacterized protein (646 aa)
     
  0.985
POPTR_0005s08230.1
SAP domain-containing family protein (690 aa)
     
  0.985
POPTR_0003s01630.1
annotation not available (392 aa)
     
  0.924
POPTR_0001s21550.1
Uncharacterized protein (424 aa)
     
  0.924
POPTR_0011s14630.1
Arginine/serine-rich family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFW8_POPTR] (418 aa)
     
  0.901
POPTR_0018s09990.1
Uncharacterized protein (66 aa)
     
        0.866
HDA902
Histone deacetylasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFZ1_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (499 aa)
     
 
  0.863
HDA903
Histone deacetylase [source-UniProtKB/TrEMBL;Acc-B9MZ37_POPTR]; Belongs to the histone deacetylase family. HD Type 1 subfamily (501 aa)
     
 
  0.863
POPTR_0005s17950.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002306498.1] (186 aa)
       
 
  0.862
MADS9
Uncharacterized protein; MADS9, AGL24 mads-box transcription factor [source-UniProtKB/TrEMBL;Acc-B9GN39_POPTR] (164 aa)
       
 
  0.862
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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