STRINGSTRING
POPTR_0003s12230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s12230.1" - Putative uncharacterized protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s12230.1Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8U1_POPTR] (589 aa)    
Predicted Functional Partners:
POPTR_0006s06030.1
Predicted protein (295 aa)
     
 
  0.947
POPTR_0025s00360.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002325141.1] (251 aa)
     
 
  0.946
POPTR_0018s12480.1
Uncharacterized protein (220 aa)
     
 
  0.946
POPTR_0002s22770.1
Predicted protein (328 aa)
     
 
  0.938
POPTR_0014s13120.1
Predicted protein (360 aa)
     
 
  0.936
POPTR_0014s13110.1
Annotation not available (67 aa)
     
 
  0.936
POPTR_0002s22780.1
Annotation not available (85 aa)
     
 
  0.934
POPTR_0009s12780.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHT5_POPTR] (324 aa)
     
 
  0.926
POPTR_0014s15450.1
Predicted protein (567 aa)
       
 
  0.924
POPTR_0006s20880.1
Uncharacterized protein (227 aa)
       
 
  0.924
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]