STRINGSTRING
POPTR_0003s13030.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s13030.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s13030.1Predicted protein (208 aa)    
Predicted Functional Partners:
POPTR_0008s17270.1
Predicted protein (593 aa)
     
      0.902
POPTR_0010s07510.1
Predicted protein (574 aa)
       
      0.898
POPTR_0009s16190.1
Predicted protein (109 aa)
   
 
      0.591
POPTR_0323s00210.1
Predicted protein (134 aa)
   
 
      0.589
POPTR_0014s10140.1
Predicted protein (287 aa)
   
 
      0.589
POPTR_0008s09710.1
Predicted protein (174 aa)
   
 
      0.575
POPTR_0011s14150.1
RNA-binding protein 45 (252 aa)
   
      0.538
POPTR_0009s11920.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8S6_POPTR] (170 aa)
   
          0.519
POPTR_0001s24310.1
Uncharacterized protein (103 aa)
   
          0.518
POPTR_0015s06810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PIG6_POPTR] (241 aa)
   
          0.516
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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