STRINGSTRING
POPTR_0003s13980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s13980.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s13980.1Predicted protein (415 aa)    
Predicted Functional Partners:
POPTR_0014s02800.1
Predicted protein (797 aa)
     
      0.631
POPTR_0002s12700.1
Uncharacterized protein (392 aa)
     
      0.631
POPTR_0003s19340.1
Predicted protein (629 aa)
     
      0.623
POPTR_0001s06900.1
Predicted protein (608 aa)
     
      0.623
POPTR_0003s13520.1
Predicted protein (284 aa)
           
  0.586
POPTR_0001s10200.1
Predicted protein (295 aa)
           
  0.586
POPTR_0006s08580.1
Predicted protein (1612 aa)
           
  0.557
POPTR_0003s14720.1
Predicted protein (484 aa)
           
  0.526
POPTR_0001s11410.1
Predicted protein (504 aa)
           
  0.526
POPTR_0001s09690.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCV7_POPTR] (248 aa)
           
  0.493
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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