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POPTR_0003s15220.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s15220.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s15220.1Uncharacterized protein (584 aa)    
Predicted Functional Partners:
POPTR_0013s02320.1
DNA polymerase (1855 aa)
     
 
  0.990
POPTR_0009s04560.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
 
  0.984
POPTR_0001s25490.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
 
  0.984
POPTR_0009s09740.1
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3’-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents (1191 aa)
     
 
0.960
POPTR_0001s43000.1
Mitotic spindle checkpoint family protein (207 aa)
       
 
  0.948
POPTR_0001s39560.1
Uncharacterized protein (511 aa)
       
 
  0.934
POPTR_0005s06690.1
DNA polymerase (1088 aa)
     
 
  0.929
POPTR_0007s10880.1
DNA polymerase (1536 aa)
     
 
  0.925
POPTR_0004s19660.1
DNA-directed DNA polymerase epsilon catalytic subunit family protein (2160 aa)
     
 
  0.919
POPTR_0003s03170.1
annotation not available (692 aa)
     
 
  0.899
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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