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STRINGSTRING
POPTR_0003s16050.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s16050.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s16050.1annotation not available (207 aa)    
Predicted Functional Partners:
POPTR_0018s01850.1
Uncharacterized protein (144 aa)
       
      0.704
POPTR_0006s27190.1
Uncharacterized protein (771 aa)
       
      0.704
POPTR_0003s15510.1
annotation not available (661 aa)
       
      0.704
POPTR_0001s12310.1
Ubiquitin-protein ligase (923 aa)
       
      0.704
POPTR_0014s05510.1
annotation not available (879 aa)
       
      0.687
POPTR_0002s14230.1
annotation not available (553 aa)
       
      0.687
POPTR_0002s14220.1
annotation not available (340 aa)
       
      0.687
POPTR_0017s14220.1
Uncharacterized protein (505 aa)
     
   
  0.671
POPTR_0015s09910.1
annotation not available (148 aa)
           
  0.660
PtrcMsrA1
Methionine sulfoxide reductase type [source-UniProtKB/TrEMBL;Acc-B9I3J4_POPTR] (190 aa)
           
  0.660
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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