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POPTR_0003s16740.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s16740.1" - White-brown-complex ABC transporter family in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s16740.1White-brown-complex ABC transporter family (1111 aa)    
Predicted Functional Partners:
POPTR_0009s05020.1
Uncharacterized protein (221 aa)
   
  0.790
POPTR_0004s22640.1
Predicted protein (59 aa)
   
  0.790
POPTR_0003s04810.1
Annotation not available (132 aa)
   
  0.790
POPTR_0003s04790.1
Predicted protein (108 aa)
   
  0.790
POPTR_0003s04780.1
Uncharacterized protein (66 aa)
   
  0.790
POPTR_0001s14640.1
Uncharacterized protein (519 aa)
   
  0.790
POPTR_0010s24230.1
Uncharacterized protein (986 aa)
   
0.704
POPTR_0003s05600.1
Predicted protein (1328 aa)
   
0.703
POPTR_0455s00200.1
Uncharacterized protein (1032 aa)
   
0.702
POPTR_0003s18140.1
Hypothetical protein (1400 aa)
   
0.702
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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