STRINGSTRING
POPTR_0003s16980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s16980.1" - F-box family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s16980.1F-box family protein (386 aa)    
Predicted Functional Partners:
POPTR_0002s07760.1
Uncharacterized protein (620 aa)
           
  0.682
POPTR_0018s14680.2
Uncharacterized protein (472 aa)
           
  0.631
POPTR_0003s17120.1
Uncharacterized protein (485 aa)
           
  0.631
POPTR_0001s13890.1
Uncharacterized protein (435 aa)
           
  0.631
POPTR_0012s11080.1
Uncharacterized protein (120 aa)
           
  0.589
POPTR_0011s02350.1
PlCYC4 family protein (478 aa)
           
  0.589
POPTR_0004s06440.1
Uncharacterized protein (473 aa)
           
  0.589
MYB157
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HPW8_POPTR] (516 aa)
           
  0.572
MYB124
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9GXK6_POPTR] (558 aa)
           
  0.572
MYB012
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9GEM7_POPTR] (583 aa)
           
  0.572
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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