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POPTR_0003s17720.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s17720.1" - Ribosomal protein S15 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s17720.1Ribosomal protein S15 (470 aa)    
Predicted Functional Partners:
POPTR_0012s08870.1
Uncharacterized protein (242 aa)
   
 
  0.997
POPTR_0001s15230.1
Ribosomal protein L19 (241 aa)
   
 
  0.997
POPTR_0006s18600.1
30S ribosomal protein S18; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEY2_POPTR]; Belongs to the bacterial ribosomal protein bS18 family (266 aa)
     
 
  0.996
POPTR_0016s06740.1
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family (278 aa)
     
 
  0.995
POPTR_0014s10670.1
Ribosomal protein L29 (142 aa)
     
 
  0.995
POPTR_0002s18690.1
Ribosomal protein L29 (144 aa)
     
 
  0.995
POPTR_0011s01580.1
annotation not available (170 aa)
     
 
  0.995
POPTR_0006s23770.1
Uncharacterized protein (290 aa)
     
 
  0.995
POPTR_0004s00660.1
Uncharacterized protein (317 aa)
     
 
  0.995
POPTR_0018s03610.1
Uncharacterized protein (229 aa)
   
 
  0.995
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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