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POPTR_0003s17970.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s17970.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s17970.1Uncharacterized protein (901 aa)    
Predicted Functional Partners:
CPE903
Structural maintenance of chromosomes protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFT3_POPTR] (1204 aa)
     
 
  0.985
POPTR_0009s15660.1
annotation not available (256 aa)
     
 
  0.985
POPTR_0014s14940.1
annotation not available (1018 aa)
     
 
  0.985
POPTR_0002s23150.1
Uncharacterized protein (1117 aa)
     
 
  0.985
CPC901
Structural maintenance of chromosomes protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9IJY0_POPTR] (1300 aa)
     
 
  0.958
CPC902
annotation not available (865 aa)
     
 
  0.952
POPTR_0005s24630.1
annotation not available (395 aa)
     
 
  0.952
CPD901
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1334 aa)
     
   
  0.935
POPTR_0011s04900.1
Uncharacterized protein (883 aa)
     
 
  0.922
POPTR_0004s04000.1
Uncharacterized protein (890 aa)
     
 
  0.922
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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