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POPTR_0003s18100.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s18100.1" - Multidrug resistance protein ABC transporter family in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s18100.1Multidrug resistance protein ABC transporter family (1401 aa)    
Predicted Functional Partners:
POPTR_0005s24740.1
Predicted protein (341 aa)
   
 
  0.763
POPTR_0002s03850.1
Predicted protein (341 aa)
   
 
  0.763
POPTR_0018s09190.1
Predicted protein (1082 aa)
       
  0.690
POPTR_0130s00210.1
Predicted protein (478 aa)
       
  0.654
POPTR_0018s08770.1
Predicted protein (477 aa)
       
  0.654
POPTR_0006s16110.1
Uncharacterized protein (478 aa)
       
  0.654
POPTR_0006s04760.1
Predicted protein (510 aa)
     
  0.615
POPTR_0015s01950.1
Predicted protein (2228 aa)
         
  0.599
POPTR_0012s01860.1
Predicted protein (2230 aa)
         
  0.599
POPTR_0010s06820.1
Predicted protein; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (274 aa)
     
  0.596
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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