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POPTR_0003s18710.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s18710.1" - 4-coumarate-coa ligase [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s18710.14-coumarate-coa ligase [source-UniProtKB/TrEMBL;Acc-B9PCM1_POPTR] (367 aa)    
Predicted Functional Partners:
POPTR_0018s08940.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI99_POPTR] (763 aa)
   
  0.901
POPTR_0008s22410.1
Predicted protein (726 aa)
   
  0.901
POPTR_0005s16540.1
Predicted protein (2268 aa)
   
 
  0.881
POPTR_0002s09330.1
Predicted protein (2276 aa)
   
 
  0.881
POPTR_0010s14560.1
Predicted protein (1686 aa)
   
  0.875
POPTR_0043s00300.1
Predicted protein (68 aa)
   
 
  0.792
POPTR_0035s00250.1
Predicted protein (90 aa)
   
 
  0.792
POPTR_0002s22410.1
Predicted protein (457 aa)
   
 
  0.792
POPTR_0001s14290.1
Uncharacterized protein (455 aa)
   
 
  0.792
POPTR_0001s14280.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEI3_POPTR] (461 aa)
   
 
  0.792
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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