STRINGSTRING
POPTR_0003s19130.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s19130.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s19130.1Predicted protein (302 aa)    
Predicted Functional Partners:
POPTR_0015s06290.1
Predicted protein (156 aa)
       
 
  0.957
POPTR_0012s05470.1
Predicted protein (157 aa)
       
 
  0.957
POPTR_0019s04890.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9IPN5_POPTR] (201 aa)
       
 
  0.951
POPTR_0013s05580.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9I5Z0_POPTR] (201 aa)
       
 
  0.951
POPTR_0017s04400.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9MYG3_POPTR] (842 aa)
       
 
  0.917
POPTR_0007s04450.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9HEY5_POPTR] (1108 aa)
       
 
  0.917
POPTR_0005s24820.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9H8P5_POPTR] (1206 aa)
       
 
  0.917
POPTR_0005s06770.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9H4B7_POPTR] (1058 aa)
       
 
  0.917
POPTR_0013s06480.1
Annotation not available (500 aa)
       
 
  0.731
POPTR_0013s06470.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9I6D4_POPTR] (1393 aa)
       
 
  0.731
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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