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STRINGSTRING
POPTR_0003s19230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s19230.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s19230.1annotation not available (287 aa)    
Predicted Functional Partners:
POPTR_2157s00200.1
annotation not available (86 aa)
   
 
  0.854
POPTR_0016s01900.1
Uncharacterized protein (326 aa)
   
 
  0.854
POPTR_0006s00850.1
Uncharacterized protein (320 aa)
   
 
  0.854
POPTR_0003s07260.1
Uncharacterized protein (300 aa)
   
 
  0.854
POPTR_0001s15940.1
Uncharacterized protein (290 aa)
   
 
  0.854
POPTR_0018s13260.1
Uncharacterized protein (423 aa)
   
 
  0.843
POPTR_0016s15020.1
Uncharacterized protein (310 aa)
   
 
  0.843
POPTR_0006s11470.1
annotation not available (298 aa)
   
 
  0.843
POPTR_0006s07030.1
Uncharacterized protein (395 aa)
   
 
  0.843
POPTR_0015s04540.1
Uncharacterized protein (485 aa)
     
 
  0.789
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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