STRINGSTRING
POPTR_0003s19230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s19230.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s19230.1Hypothetical protein (287 aa)    
Predicted Functional Partners:
POPTR_0018s13260.1
Predicted protein (423 aa)
     
 
  0.961
POPTR_0016s15020.1
Predicted protein (310 aa)
     
 
  0.961
POPTR_0006s11470.1
Uncharacterized protein (298 aa)
     
 
  0.961
POPTR_0006s07030.1
Predicted protein (395 aa)
     
 
  0.961
POPTR_2157s00200.1
Uncharacterized protein (86 aa)
     
 
  0.959
POPTR_0016s01900.1
Predicted protein (326 aa)
     
 
  0.959
POPTR_0006s00850.1
Predicted protein (320 aa)
     
 
  0.959
POPTR_0003s07260.1
Predicted protein (300 aa)
     
 
  0.959
POPTR_0001s15940.1
Predicted protein (290 aa)
     
 
  0.959
POPTR_0015s04540.1
Predicted protein (485 aa)
     
 
  0.932
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (16%) [HD]