STRINGSTRING
POPTR_0003s19450.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s19450.1" - Uncharacterized protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s19450.1Uncharacterized protein (113 aa)    
Predicted Functional Partners:
POPTR_1602s00200.1
Uncharacterized protein (129 aa)
         
    0.900
POPTR_0019s15110.1
Cytochrome P450Trans-cinnamate 4-hydroxylaseTrans-cinnamate 4-monooxygenase [source-UniProtKB/TrEMBL;Acc-B2Z6P4_POPTR] (505 aa)
         
    0.900
POPTR_0018s06630.1
Predicted protein (236 aa)
         
    0.900
CHS
Chalcone synthase [source-UniProtKB/TrEMBL;Acc-Q2ENC2_POPTR] (396 aa)
         
 
0.900
POPTR_0013s15380.1
Cytochrome P450 cinnamate 4-hydroxylaseTrans-cinnamate 4-monooxygenase [source-UniProtKB/TrEMBL;Acc-A9PBZ7_POPTR] (505 aa)
         
    0.900
POPTR_0012s13440.1
Chalcone synthase-like protein [source-UniProtKB/TrEMBL;Acc-B9ND63_POPTR] (395 aa)
         
 
0.900
POPTR_0010s21980.1
Chalcone isomerasePutative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE73_POPTR] (223 aa)
         
    0.900
POPTR_0010s11500.1
Trans-caffeoyl-coa 3-o-methyltransferase-like protein [source-UniProtKB/TrEMBL;Acc-B9HVT7_POPTR] (234 aa)
         
    0.900
POPTR_0009s10270.1
Caffeoyl-CoA O-methyltransferase 1 [source-UniProtKB/Swiss-Prot;Acc-CAMT1_POPTR] (247 aa)
         
    0.900
POPTR_0008s13600.1
Putative uncharacterized proteinTrans-caffeoyl-CoA 3-O-methyltransferaseTrans-caffeoyl-coa 3-o-methyltransferase-like protein [source-UniProtKB/TrEMBL;Acc-A9PCU8_POPTR] (235 aa)
         
    0.900
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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