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CHR943 protein (Populus trichocarpa) - STRING interaction network
"CHR943" - SNF2 domain-containing family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR943SNF2 domain-containing family protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9GWX1_POPTR] (1333 aa)    
Predicted Functional Partners:
POPTR_0008s10960.1
Uncharacterized protein (155 aa)
           
  0.795
POPTR_0009s04560.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
 
  0.794
POPTR_0001s25490.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
   
 
  0.794
POPTR_0012s11560.1
Uncharacterized protein; P-loop containing nucleoside triphosphate hydrolases superfamily protein (1031 aa)
   
 
  0.724
POPTR_0019s03520.1
annotation not available (1019 aa)
     
      0.712
POPTR_0013s04340.1
Uncharacterized protein (1070 aa)
     
      0.712
POPTR_0003s15220.1
Uncharacterized protein (584 aa)
   
 
  0.693
POPTR_0013s02320.1
DNA polymerase (1855 aa)
   
 
  0.657
POPTR_0009s09740.1
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3’-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents (1191 aa)
   
 
  0.655
POPTR_0017s08230.1
annotation not available (285 aa)
     
 
  0.599
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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