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POPTR_0003s20360.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s20360.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s20360.1Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family (385 aa)    
Predicted Functional Partners:
atpB
ATP synthase subunit beta, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family (217 aa)
     
 
  0.943
POPTR_0012s05640.1
annotation not available (68 aa)
     
 
  0.934
PtrAtpB_1
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (558 aa)
     
 
  0.879
POPTR_0008s12550.1
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (559 aa)
     
 
  0.879
POPTR_0015s08910.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PED6_POPTR]; Belongs to the heat shock protein 70 family (282 aa)
     
 
  0.868
POPTR_0001s29170.1
Uncharacterized protein; Belongs to the heat shock protein 70 family (282 aa)
     
 
  0.868
POPTR_0008s21750.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002331556.1] (66 aa)
     
 
  0.867
POPTR_0002s20240.1
Fumarate hydratase 1 family protein (490 aa)
     
        0.866
POPTR_0013s13900.1
Uncharacterized protein (945 aa)
       
 
  0.819
POPTR_0009s16660.1
Cytochrome c1 family protein (310 aa)
     
 
  0.800
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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