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STRINGSTRING
POPTR_0003s20970.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s20970.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s20970.1Uncharacterized protein (243 aa)    
Predicted Functional Partners:
POPTR_0005s17060.1
Uncharacterized protein (122 aa)
     
 
  0.835
POPTR_0002s09700.1
UPF0315 family protein (122 aa)
     
 
  0.835
POPTR_0004s01500.1
Met-10++ like family protein (1030 aa)
       
 
  0.806
POPTR_0014s10930.1
Uncharacterized protein (358 aa)
   
 
  0.760
POPTR_0019s09220.1
Peptide chain release factor family protein (257 aa)
   
 
  0.756
POPTR_0014s12790.1
Albino and pale green family protein (416 aa)
   
 
  0.756
POPTR_0013s01060.1
Uncharacterized protein (488 aa)
   
 
  0.756
POPTR_0010s18900.1
Putative translation releasing factor 2 family protein (59 aa)
   
 
  0.756
POPTR_0008s07570.1
Uncharacterized protein (466 aa)
   
 
  0.756
POPTR_0006s04370.1
Uncharacterized protein (420 aa)
   
 
  0.756
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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