STRINGSTRING
POPTR_0004s00240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s00240.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s00240.1Uncharacterized protein (447 aa)    
Predicted Functional Partners:
POPTR_0009s11230.1
Uncharacterized protein (85 aa)
       
 
  0.830
POPTR_0010s00680.1
Protein HY5 family protein (218 aa)
           
  0.804
POPTR_0014s15740.1
Photoregulatory zinc-finger protein COP1 (672 aa)
       
 
  0.802
POPTR_0011s00900.1
Uncharacterized protein (607 aa)
       
 
  0.802
POPTR_0004s00430.1
annotation not available (406 aa)
       
 
  0.802
POPTR_0018s01420.1
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
   
 
  0.801
POPTR_0018s01530.1
BZIP with a Ring-finger motif family protein (168 aa)
           
  0.796
POPTR_0006s26800.1
BZIP with a Ring-finger motif family protein (169 aa)
           
  0.796
phya
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light- the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region (1126 aa)
           
  0.741
POPTR_0006s29230.1
Cryptochrome dash family protein (567 aa)
           
  0.741
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (8%) [HD]