STRINGSTRING
POPTR_0004s00440.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s00440.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s00440.1Predicted protein (207 aa)    
Predicted Functional Partners:
POPTR_0003s20390.1
Predicted protein (682 aa)
       
      0.600
POPTR_0008s22140.1
Predicted protein (998 aa)
       
      0.588
POPTR_0008s22130.1
Predicted protein (1098 aa)
       
      0.588
POPTR_0001s05640.1
Predicted protein (512 aa)
       
      0.564
POPTR_0010s23850.1
Predicted protein (384 aa)
       
 
  0.461
POPTR_0008s02930.1
Uncharacterized protein (382 aa)
       
 
  0.461
POPTR_0001s34940.1
Uncharacterized protein (590 aa)
       
 
  0.461
POPTR_0014s10500.1
Predicted protein (213 aa)
       
      0.457
POPTR_0002s18420.1
Chloroplast import-associated protein IAP36; GTPase involved in protein precursor import into chloroplasts. Seems to recognize chloroplast-destined precursor proteins and regulate their presentation to the translocation channel through GTP hydrolysis (246 aa)
       
      0.457
POPTR_0016s03060.1
Predicted protein (661 aa)
     
 
  0.444
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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