STRINGSTRING
POPTR_0004s00650.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s00650.1" - Annotation not available in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s00650.1Annotation not available (166 aa)    
Predicted Functional Partners:
POPTR_0001s09720.1
Predicted protein (663 aa)
       
 
  0.746
POPTR_0004s10680.1
Predicted protein (356 aa)
       
      0.676
POPTR_0007s14130.1
WUS protein [source-UniProtKB/TrEMBL;Acc-A0AAS8_POPTR] (264 aa)
           
  0.648
POPTR_0005s11680.1
Predicted protein (264 aa)
           
  0.648
KNOX
KNOX3 [source-UniProtKB/TrEMBL;Acc-A7XAJ1_POPTR] (260 aa)
     
   
  0.640
POPTR_0017s13950.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9N208_POPTR] (363 aa)
     
 
  0.612
POPTR_0006s08610.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HBM2_POPTR] (369 aa)
     
 
  0.612
POPTR_0004s10250.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9H3Q2_POPTR] (361 aa)
     
 
  0.612
POPTR_0008s15860.1
Argonaute protein group [source-UniProtKB/TrEMBL;Acc-B9HKB5_POPTR] (996 aa)
       
 
  0.607
POPTR_0003s13120.1
Uncharacterized protein (664 aa)
       
 
0.581
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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