STRINGSTRING
POPTR_0004s00800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s00800.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s00800.1Predicted protein (272 aa)    
Predicted Functional Partners:
POPTR_0387s00220.1
Uncharacterized protein (217 aa)
     
      0.738
POPTR_0010s25520.1
Predicted protein (384 aa)
     
      0.738
POPTR_0008s01070.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002310916.1] (332 aa)
     
      0.738
POPTR_0018s02040.1
Predicted protein (572 aa)
   
      0.616
POPTR_0010s13240.1
Predicted protein (532 aa)
   
      0.616
POPTR_0008s12190.1
Uncharacterized protein (119 aa)
   
      0.616
POPTR_0008s12180.1
Uncharacterized protein (82 aa)
   
      0.616
POPTR_0014s13650.1
Tyrosyl-tRNA synthetase (329 aa)
     
      0.607
POPTR_0006s04100.1
Predicted protein (279 aa)
 
   
  0.586
POPTR_0015s10210.1
Uncharacterized protein (313 aa)
 
          0.575
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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