STRINGSTRING
POPTR_0004s01390.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s01390.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s01390.1Predicted protein (380 aa)    
Predicted Functional Partners:
POPTR_0007s08470.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PA86_POPTR] (530 aa)
     
    0.524
POPTR_0015s09540.1
Predicted protein (515 aa)
     
    0.523
POPTR_0001s28740.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGU0_POPTR] (371 aa)
     
    0.521
POPTR_0012s01080.1
Predicted protein (822 aa)
     
    0.516
POPTR_0015s05870.1
Annotation not available (747 aa)
     
    0.512
POPTR_0013s08530.1
Predicted protein (725 aa)
     
    0.507
POPTR_0015s05830.1
Uncharacterized protein (764 aa)
     
    0.506
POPTR_0012s08760.1
Uncharacterized protein (510 aa)
     
    0.506
POPTR_0008s14960.1
Predicted protein (514 aa)
     
    0.506
POPTR_2303s00200.1
Uncharacterized protein (664 aa)
       
    0.492
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]