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POPTR_0004s01930.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s01930.1" - Uncharacterized protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s01930.1Uncharacterized protein (405 aa)    
Predicted Functional Partners:
POPTR_0005s09660.1
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate (387 aa)
           
  0.633
POPTR_0005s09650.1
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate (320 aa)
           
  0.633
POPTR_0001s34550.1
Uncharacterized protein (385 aa)
           
  0.618
POPTR_0001s34540.1
Uncharacterized protein (379 aa)
           
  0.618
POPTR_0007s06550.1
4-alpha-glucanotransferase (574 aa)
           
  0.570
POPTR_0002s10420.1
Glucose-6-phosphate isomerase; Belongs to the GPI family (616 aa)
           
  0.511
POPTR_0005s27240.1
Uncharacterized protein; Starch branching enzyme I [source-UniProtKB/TrEMBL;Acc-A2TIS0_POPTR] (859 aa)
           
  0.475
POPTR_0014s11610.1
DNA helicase; Belongs to the MCM family (718 aa)
     
   
  0.468
POPTR_0010s01910.1
Uncharacterized protein; Putative chloroplast 1-deoxy-D-xylulose 5-phosphate synthase [source-UniProtKB/TrEMBL;Acc-B3GEM0_POPTR] (721 aa)
           
  0.465
POPTR_0008s20100.1
1-deoxy-D-xylulose 5-phosphate synthase family protein (713 aa)
           
  0.465
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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