• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0004s01980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s01980.1" - PROTODERMAL FACTOR2 family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s01980.1PROTODERMAL FACTOR2 family protein (725 aa)    
Predicted Functional Partners:
POPTR_0001s36620.1
Uncharacterized protein (433 aa)
           
  0.593
POPTR_0021s01010.1
Uncharacterized protein (327 aa)
           
  0.539
POPTR_0017s11800.1
Uncharacterized protein (306 aa)
           
  0.539
POPTR_0004s01770.1
TOBAMOVIRUS MULTIPLICATION 1 family protein (291 aa)
           
  0.539
MYB054
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9IC96_POPTR] (553 aa)
           
  0.535
MYB131
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9GWF4_POPTR] (419 aa)
           
  0.535
POPTR_0003s20990.1
Uncharacterized protein; Belongs to the peptidase C2 family (1916 aa)
           
  0.525
POPTR_0001s04110.1
Uncharacterized protein; Belongs to the peptidase C2 family (2123 aa)
           
  0.525
POPTR_0003s14770.1
Uncharacterized protein (248 aa)
       
 
  0.462
POPTR_0001s11490.1
Uncharacterized protein (349 aa)
       
 
  0.462
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]