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POPTR_0004s04150.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s04150.1" - Fatty acid desaturase family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s04150.1Fatty acid desaturase family protein (134 aa)    
Predicted Functional Partners:
POPTR_0010s19920.1
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family (326 aa)
     
 
  0.973
POPTR_0017s08440.1
Uncharacterized protein (254 aa)
         
  0.958
POPTR_0011s00700.1
Uncharacterized protein (256 aa)
         
  0.958
POPTR_0004s00290.1
Acyl-CoA independent ceramide synthase family protein (256 aa)
         
  0.958
POPTR_0001s32480.1
Uncharacterized protein (254 aa)
         
  0.958
POPTR_0006s21090.1
Phosphatidic acid phosphatase family protein (407 aa)
         
  0.958
POPTR_0004s24150.1
Ceramide kinase-related family protein (627 aa)
         
  0.957
POPTR_0015s06530.1
Uncharacterized protein (313 aa)
         
  0.957
POPTR_0010s14480.1
Uncharacterized protein (308 aa)
         
  0.957
POPTR_0011s04330.1
Diacylglycerol kinase family protein (494 aa)
         
  0.954
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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