STRINGSTRING
POPTR_0004s04190.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s04190.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s04190.1Predicted protein (504 aa)    
Predicted Functional Partners:
POPTR_0001s36730.1
Predicted protein (283 aa)
   
  0.991
POPTR_0001s16010.1
Predicted protein (471 aa)
       
  0.981
POPTR_0010s02380.1
Predicted protein (1179 aa)
   
  0.979
POPTR_0008s22670.1
Uncharacterized protein (615 aa)
   
  0.979
POPTR_0003s19810.1
Uridine 5’-monophosphate synthase family protein (452 aa)
   
 
  0.973
POPTR_0001s06360.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHV8_POPTR] (475 aa)
   
 
  0.973
POPTR_0002s23930.1
Predicted protein (331 aa)
 
 
  0.961
POPTR_0012s04020.1
Uncharacterized protein (353 aa)
 
  0.949
POPTR_0015s05410.1
Predicted protein (425 aa)
 
  0.947
POPTR_0010s20790.1
Predicted protein (1413 aa)
   
   
  0.939
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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