STRINGSTRING
POPTR_0004s05640.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s05640.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s05640.1Predicted protein (506 aa)    
Predicted Functional Partners:
POPTR_0017s13520.1
Predicted protein (379 aa)
       
  0.914
POPTR_0017s13500.1
Predicted protein (205 aa)
       
  0.914
POPTR_0014s03540.1
Predicted protein (123 aa)
       
  0.914
POPTR_0014s03530.1
Predicted protein (391 aa)
       
  0.914
POPTR_0013s13590.1
Predicted protein (217 aa)
       
  0.914
POPTR_0014s15240.1
Predicted protein (411 aa)
         
  0.640
POPTR_0004s01220.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEF8_POPTR] (465 aa)
         
  0.640
POPTR_0004s01190.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002332674.1] (211 aa)
         
  0.640
POPTR_0016s09050.1
Predicted protein (352 aa)
       
 
  0.588
POPTR_0013s02630.1
Predicted protein (417 aa)
       
 
  0.588
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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