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STRINGSTRING
POPTR_0004s05800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s05800.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s05800.1Uncharacterized protein (226 aa)    
Predicted Functional Partners:
POPTR_0014s16820.1
Glycoside hydrolase starch-binding domain-containing family protein (995 aa)
     
   
  0.746
POPTR_0004s07810.1
Septum site-determining family protein (326 aa)
     
   
  0.578
POPTR_0002s05390.1
mRNA-binding family protein (404 aa)
     
   
  0.532
POPTR_0005s23110.1
Uncharacterized protein (437 aa)
     
   
  0.521
POPTR_0018s06210.1
HIGH-CHLOROPHYLL-FLUORESCENCE 101 family protein (517 aa)
     
   
  0.517
POPTR_0006s04370.1
Uncharacterized protein (420 aa)
     
   
  0.506
POPTR_0014s00250.1
annotation not available (587 aa)
     
   
  0.492
POPTR_0007s15080.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHQ9_POPTR] (569 aa)
     
   
  0.492
POPTR_0002s03890.1
Uncharacterized protein (389 aa)
     
   
  0.487
POPTR_0005s24670.1
Uncharacterized protein (389 aa)
           
  0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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