• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0004s05830.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s05830.1" - Cellulose synthase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s05830.1Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily (1014 aa)    
Predicted Functional Partners:
POPTR_0002s25970.1
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily (1042 aa)
     
 
0.978
POPTR_0018s11290.1
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily (1032 aa)
     
 
0.971
POPTR_0006s19580.1
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily (1036 aa)
     
 
0.971
POPTR_0013s13090.1
Calmodulin-binding family protein (528 aa)
     
   
  0.902
POPTR_0019s12550.1
Calmodulin-binding family protein (530 aa)
     
   
  0.888
POPTR_0008s07330.1
Uncharacterized protein (425 aa)
     
        0.888
POPTR_0005s11150.1
Uncharacterized protein (141 aa)
     
        0.880
POPTR_0015s07500.1
Uncharacterized protein (357 aa)
     
        0.879
POPTR_0017s01510.1
Uncharacterized protein (176 aa)
     
        0.877
POPTR_0010s19140.1
Uncharacterized protein (427 aa)
     
        0.876
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (8%) [HD]