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STRINGSTRING
POPTR_0004s06940.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s06940.1" - Putative uncharacterized protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
POPTR_0004s06940.1Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P933_POPTR] (358 aa)    
Predicted Functional Partners:
POPTR_0015s14260.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCC6_POPTR] (215 aa)
     
 
  0.991
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
   
 
  0.988
POPTR_0005s26260.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8B9_POPTR] (823 aa)
     
 
  0.985
POPTR_0017s01160.1
Uncharacterized protein (703 aa)
     
 
  0.974
POPTR_0016s00510.1
HSP80 family protein (698 aa)
     
 
  0.974
POPTR_0014s16280.1
Uncharacterized protein (723 aa)
     
 
  0.974
POPTR_0010s14660.1
Heat shock family protein (793 aa)
     
 
  0.974
POPTR_0008s11190.1
Heat shock family protein (791 aa)
     
 
  0.974
POPTR_0006s00470.1
HSP80 family protein (699 aa)
     
 
  0.974
POPTR_0004s07190.1
Uncharacterized protein (703 aa)
     
 
  0.974
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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