STRINGSTRING
POPTR_0004s07130.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s07130.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s07130.1Predicted protein (182 aa)    
Predicted Functional Partners:
POPTR_0014s10200.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFP7_POPTR] (172 aa)
   
        0.615
POPTR_0001s03600.1
Predicted protein (465 aa)
   
        0.512
POPTR_0001s10480.1
Uncharacterized protein (119 aa)
   
          0.496
POPTR_0005s05630.1
Predicted protein (281 aa)
   
        0.493
POPTR_0005s15630.1
Predicted protein (242 aa)
   
          0.479
POPTR_0006s05910.1
Predicted protein (251 aa)
   
        0.476
POPTR_0046s00300.1
Uncharacterized protein (198 aa)
   
          0.472
POPTR_0008s11440.1
Uncharacterized protein (272 aa)
   
          0.464
POPTR_0003s13830.1
Predicted protein (193 aa)
   
        0.463
POPTR_0007s13790.1
Predicted protein (282 aa)
   
          0.463
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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