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STRINGSTRING
POPTR_0004s07570.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s07570.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s07570.1annotation not available (996 aa)    
Predicted Functional Partners:
POPTR_0019s03520.1
annotation not available (1019 aa)
     
      0.708
POPTR_0013s04340.1
Uncharacterized protein (1070 aa)
     
      0.708
POPTR_0016s12770.1
Uncharacterized protein (735 aa)
     
   
  0.605
POPTR_0009s16880.1
Uncharacterized protein (234 aa)
           
  0.600
POPTR_0007s11910.1
Uncharacterized protein (467 aa)
           
  0.600
POPTR_0003s07480.1
Protein transport protein sec16 (1371 aa)
     
        0.598
POPTR_0001s15800.1
Protein transport protein sec16 (1388 aa)
     
        0.598
POPTR_0006s08580.1
Uncharacterized protein (1612 aa)
     
        0.573
POPTR_0012s06300.1
Uncharacterized protein (773 aa)
     
 
  0.563
POPTR_0010s22310.1
Uncharacterized protein (1194 aa)
     
 
  0.550
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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