STRINGSTRING
POPTR_0004s07900.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s07900.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s07900.1Predicted protein (741 aa)    
Predicted Functional Partners:
POPTR_0009s11230.1
Predicted protein (85 aa)
       
 
  0.704
POPTR_0010s10150.1
Predicted protein (540 aa)
     
  0.693
POPTR_0005s23120.1
Predicted protein (542 aa)
     
  0.693
POPTR_0002s05380.1
Predicted protein (543 aa)
     
  0.693
POPTR_0018s01420.1
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.689
POPTR_0018s01400.1
Predicted protein (221 aa)
     
  0.689
POPTR_0006s26660.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PD29_POPTR]; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.689
POPTR_0006s26650.1
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (221 aa)
     
  0.689
POPTR_0018s07290.1
Predicted protein (483 aa)
     
   
  0.591
POPTR_0006s13810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHU1_POPTR] (456 aa)
     
   
  0.591
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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