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STRINGSTRING
POPTR_0004s07920.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s07920.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s07920.1annotation not available (323 aa)    
Predicted Functional Partners:
POPTR_0017s04520.1
Aminophospholipid ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily (1107 aa)
     
 
  0.697
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
        0.692
POPTR_0010s04910.1
annotation not available (1110 aa)
     
 
  0.690
POPTR_0008s19560.1
Aminophospholipid ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily (1098 aa)
     
 
  0.690
POPTR_0018s09160.1
Uncharacterized protein (332 aa)
     
   
  0.671
POPTR_0014s09770.1
GTP-binding family protein (238 aa)
     
 
  0.619
POPTR_0002s17620.1
GTP-binding family protein (234 aa)
     
 
  0.619
POPTR_0001s35170.1
Zinc finger family protein (393 aa)
     
   
  0.602
POPTR_0007s07860.1
S-acyltransferase; Belongs to the DHHC palmitoyltransferase family (342 aa)
     
   
  0.602
POPTR_0001s11300.1
Uncharacterized protein (318 aa)
           
  0.602
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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