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POPTR_0004s08800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s08800.1" - Kinase family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s08800.1Kinase family protein (520 aa)    
Predicted Functional Partners:
POPTR_0010s06830.1
Leucine-rich repeat family protein (532 aa)
       
 
  0.555
POPTR_0002s25790.1
Uncharacterized protein; Glycosyltransferase, CAZy family GT47 (585 aa)
     
   
  0.541
POPTR_0015s14230.1
Exostosin family protein (516 aa)
           
  0.541
POPTR_0012s14220.1
Exostosin family protein (512 aa)
           
  0.541
POPTR_0001s42680.1
Cucumber protein kinase CsPK3; Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002300441.1] (386 aa)
   
 
 
  0.473
PtrEXPA18
Alpha-expansin 11 family protein; Putative uncharacterized protein PtrEXPA18 [source-UniProtKB/TrEMBL;Acc-B9H521_POPTR] (256 aa)
           
  0.470
PtrEXPA17
Alpha-expansin 11 family protein; Putative uncharacterized protein PtrEXPA17 [source-UniProtKB/TrEMBL;Acc-B9GQ86_POPTR] (256 aa)
           
  0.470
POPTR_0005s18240.1
Uncharacterized protein; Belongs to the protein kinase superfamily (338 aa)
   
      0.437
POPTR_0007s13520.1
ROTUNDIFOLIA 3 family protein; Belongs to the cytochrome P450 family (498 aa)
       
 
  0.415
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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