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POPTR_0004s09330.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s09330.1" - Silencing group A protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s09330.1Silencing group A protein [source-UniProtKB/TrEMBL;Acc-B9H343_POPTR] (190 aa)    
Predicted Functional Partners:
POPTR_0009s14710.1
Transducin family protein (1040 aa)
     
  0.988
POPTR_0004s19570.1
Putative uncharacterized protein (1043 aa)
     
  0.988
POPTR_0007s03930.1
Uncharacterized protein (450 aa)
     
 
  0.971
POPTR_0013s06450.1
Histone acetyltransferase [source-UniProtKB/TrEMBL;Acc-B9I6D2_POPTR] (463 aa)
     
 
  0.960
POPTR_0019s07500.1
Predicted protein (105 aa)
     
 
  0.957
POPTR_0009s15730.1
Predicted protein (680 aa)
     
 
  0.957
POPTR_0009s15720.1
Predicted protein (129 aa)
     
 
  0.957
POPTR_0004s20430.1
Predicted protein (687 aa)
     
 
  0.957
POPTR_0019s03130.1
Predicted protein (738 aa)
     
 
  0.957
POPTR_0013s09210.1
DNA helicase (612 aa)
     
 
  0.957
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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