STRINGSTRING
POPTR_0004s10620.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s10620.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s10620.1Predicted protein (556 aa)    
Predicted Functional Partners:
POPTR_0017s10480.1
Predicted protein (279 aa)
     
 
  0.795
POPTR_0001s36300.1
Predicted protein (279 aa)
     
 
  0.795
POPTR_0017s04870.1
Predicted protein (290 aa)
     
 
  0.788
POPTR_0007s01410.1
Predicted protein (290 aa)
     
 
  0.788
POPTR_0013s10990.1
Predicted protein (426 aa)
   
 
  0.733
atpB
F-ATPase subunit beta ; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (217 aa)
     
  0.726
POPTR_0012s05640.1
Uncharacterized protein (68 aa)
     
 
  0.716
POPTR_0013s09940.1
Predicted protein (372 aa)
   
 
  0.714
POPTR_0008s09700.1
Predicted protein (511 aa)
   
   
  0.673
POPTR_0017s10740.1
Predicted protein (454 aa)
     
 
  0.645
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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