STRINGSTRING
POPTR_0004s11620.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s11620.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s11620.1Predicted protein (433 aa)    
Predicted Functional Partners:
POPTR_0014s01060.1
Predicted protein (625 aa)
     
   
  0.765
POPTR_0002s25970.1
Cellulose synthase (1042 aa)
     
   
  0.601
POPTR_0001s12940.1
Predicted protein (412 aa)
           
  0.592
POPTR_0008s01310.1
Fasciclin-like domain-containing protein (463 aa)
     
   
  0.586
MYB167
MYB transcription factorPredicted protein [source-UniProtKB/TrEMBL;Acc-B9I4W4_POPTR] (243 aa)
     
   
  0.585
MYB156
MYB transcription factorPredicted protein [source-UniProtKB/TrEMBL;Acc-B9HR69_POPTR] (271 aa)
           
  0.574
MYB221
MYB transcription factorPredicted protein [source-UniProtKB/TrEMBL;Acc-B9H191_POPTR] (268 aa)
     
   
  0.551
POPTR_0019s14430.1
Predicted protein (263 aa)
     
        0.439
POPTR_0013s14780.1
Uncharacterized protein (254 aa)
     
        0.432
POPTR_0019s14420.1
Fasciclin-like AGP 15 family protein (263 aa)
     
        0.401
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (12%) [HD]