• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0004s11710.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s11710.1" - tRNA in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s11710.1tRNA (guanine(26)-N(2))-dimethyltransferase (582 aa)    
Predicted Functional Partners:
POPTR_0016s09300.1
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family (606 aa)
     
   
  0.961
POPTR_0019s08410.1
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (316 aa)
   
 
  0.958
POPTR_0010s20970.1
Uncharacterized protein (232 aa)
     
 
  0.957
POPTR_0009s12100.1
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (840 aa)
     
 
  0.957
POPTR_0005s25940.1
Eukaryotic initiation factor 3 gamma subunit family protein (434 aa)
     
 
  0.948
POPTR_0002s02490.1
Uncharacterized protein (443 aa)
     
 
  0.948
POPTR_0008s08430.1
Uncharacterized protein; Belongs to the DEAD box helicase family (496 aa)
   
      0.944
POPTR_0005s23320.1
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit; Belongs to the WD repeat TRM82 family (440 aa)
     
   
  0.939
POPTR_0005s17450.1
RNA recognition motif-containing family protein (309 aa)
     
 
  0.936
POPTR_0009s01860.1
Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family (359 aa)
     
   
  0.933
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (9%) [HD]