• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0004s11930.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s11930.1" - Carboxypeptidase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s11930.1Carboxypeptidase; Belongs to the peptidase S10 family (470 aa)    
Predicted Functional Partners:
POPTR_0008s16030.1
Uncharacterized protein; Acylaminoacyl-peptidase-related (808 aa)
           
  0.601
POPTR_0001s34410.1
Uncharacterized protein (229 aa)
     
   
  0.586
POPTR_0007s14570.1
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues; Belongs to the glycosyl hydrolase 16 family (296 aa)
           
  0.580
POPTR_0004s21600.1
Hexosyltransferase; Glycosyltransferase, family GT8; Belongs to the glycosyltransferase 8 family (655 aa)
           
  0.579
POPTR_0007s08120.1
Invertase/pectin methylesterase inhibitor family protein (180 aa)
           
  0.567
POPTR_0006s04560.1
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde (284 aa)
     
   
  0.566
POPTR_0008s10940.1
Uncharacterized protein (263 aa)
     
   
  0.551
POPTR_0005s08880.1
Brassinosteroid insensitive 1 family protein; Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002307104.1]; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (874 aa)
     
   
  0.542
POPTR_0003s07750.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEM3_POPTR] (936 aa)
           
  0.539
POPTR_0001s15500.1
Uncharacterized protein (904 aa)
           
  0.539
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (11%) [HD]