STRINGSTRING
POPTR_0004s12180.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s12180.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s12180.1Uncharacterized protein (332 aa)    
Predicted Functional Partners:
POPTR_0005s24740.1
Predicted protein (341 aa)
   
 
  0.763
POPTR_0002s03850.1
Predicted protein (341 aa)
   
 
  0.763
POPTR_0006s22830.1
Hypothetical protein (482 aa)
   
   
  0.747
POPTR_0010s05600.1
ABC transporter family protein (797 aa)
   
   
  0.737
POPTR_0003s13550.1
Uncharacterized protein (402 aa)
   
     
  0.695
POPTR_0003s19670.1
Multidrug resistance protein ABC transporter family (417 aa)
   
     
  0.689
POPTR_1557s00200.1
Uncharacterized protein (419 aa)
   
     
  0.673
POPTR_0011s09370.1
Annotation not available (372 aa)
   
     
  0.667
POPTR_0130s00210.1
Predicted protein (478 aa)
       
  0.654
POPTR_0018s08770.1
Predicted protein (477 aa)
       
  0.654
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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