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POPTR_0004s12240.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s12240.1" - Alpha-1 family protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s12240.1Alpha-1 family protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (843 aa)    
Predicted Functional Partners:
POPTR_0015s11540.1
Predicted protein (57 aa)
   
  0.982
POPTR_0006s11620.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002326378.1] (540 aa)
   
  0.982
POPTR_0006s11600.1
Uncharacterized protein (313 aa)
   
  0.982
POPTR_0005s27240.1
Starch branching enzyme I [source-UniProtKB/TrEMBL;Acc-A2TIS0_POPTR] (859 aa)
   
  0.982
POPTR_0001s36980.1
Predicted protein (571 aa)
   
  0.982
POPTR_0001s36970.1
Predicted protein (64 aa)
   
  0.982
POPTR_0001s36960.1
Predicted protein (270 aa)
   
  0.982
POPTR_0015s14020.1
Predicted protein (629 aa)
   
 
  0.933
POPTR_0012s14030.1
Predicted protein (631 aa)
   
 
  0.933
POPTR_0010s11970.1
Predicted protein (582 aa)
   
 
  0.933
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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