STRINGSTRING
POPTR_0004s12310.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s12310.1" - Auxin efflux carrier component [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s12310.1Auxin efflux carrier component [source-UniProtKB/TrEMBL;Acc-B9H0D9_POPTR]; May act as a component of the auxin efflux carrier (355 aa)    
Predicted Functional Partners:
POPTR_0006s14570.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9I634_POPTR] (1086 aa)
           
  0.558
POPTR_0006s12170.1
Predicted protein (419 aa)
           
  0.558
POPTR_0014s07010.1
MIKC mads-box transcription factor PTM5 (MADS4), mRNA [source-RefSeq DNA_predicted;Acc-XM_002320711.1] (148 aa)
           
  0.424
POPTR_0002s15300.1
MIKC mads-box transcription factor SOC1 [source-UniProtKB/TrEMBL;Acc-B9GPT3_POPTR] (135 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (15%) [HD]