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POPTR_0004s12770.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s12770.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s12770.1Uncharacterized protein (201 aa)    
Predicted Functional Partners:
POPTR_0008s20730.1
Uncharacterized protein; Belongs to the peptidase A1 family (437 aa)
     
        0.838
POPTR_0019s08450.1
Alpha-galactosidase (437 aa)
         
  0.794
POPTR_0009s02670.1
Uncharacterized protein (286 aa)
     
   
  0.787
POPTR_0001s22800.1
Uncharacterized protein (288 aa)
     
   
  0.787
GolS7
Hexosyltransferase; Belongs to the glycosyltransferase 8 family (325 aa)
         
  0.762
POPTR_0008s10040.1
Hexosyltransferase; Belongs to the glycosyltransferase 8 family (325 aa)
         
  0.762
POPTR_0014s11370.1
Stachyose synthase family protein (867 aa)
         
  0.754
POPTR_0002s19450.1
annotation not available (834 aa)
         
  0.754
POPTR_0004s03830.1
Alpha-galactosidase (404 aa)
         
  0.745
GOLS2
Hexosyltransferase; Galactinol synthase 2 [source-UniProtKB/TrEMBL;Acc-A9PBH8_POPTR]; Belongs to the glycosyltransferase 8 family (336 aa)
         
  0.714
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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