STRINGSTRING
POPTR_0004s13500.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s13500.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s13500.1Uncharacterized protein (512 aa)    
Predicted Functional Partners:
POPTR_0014s09620.1
Predicted protein (197 aa)
       
      0.867
POPTR_0002s17450.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCE1_POPTR] (199 aa)
       
      0.867
POPTR_0010s11700.1
Predicted protein (725 aa)
     
      0.561
POPTR_0008s13420.1
Hypothetical protein (709 aa)
     
      0.561
POPTR_0017s11460.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9IJT6_POPTR] (610 aa)
     
      0.555
POPTR_0004s12290.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9H0D7_POPTR] (644 aa)
     
      0.555
POPTR_0013s07820.1
Uncharacterized protein (198 aa)
       
      0.549
POPTR_0013s07790.1
Predicted protein (240 aa)
       
      0.549
POPTR_0337s00210.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002334004.1] (488 aa)
     
      0.526
POPTR_0007s13400.1
Predicted protein (488 aa)
     
      0.526
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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