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POPTR_0004s13630.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0004s13630.1" - High mobility group family [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0004s13630.1High mobility group family [source-UniProtKB/TrEMBL;Acc-B9H3Z6_POPTR] (165 aa)    
Predicted Functional Partners:
POPTR_0013s00600.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9I6M9_POPTR] (1111 aa)
     
  0.900
POPTR_0013s00590.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9I6M8_POPTR] (1082 aa)
     
  0.900
POPTR_0005s00700.1
Uncharacterized protein (1069 aa)
     
  0.900
POPTR_0005s00690.1
Global transcription factor group [source-UniProtKB/TrEMBL;Acc-B9N434_POPTR] (1065 aa)
     
  0.900
POPTR_0017s11460.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9IJT6_POPTR] (610 aa)
     
  0.868
POPTR_0004s12290.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9H0D7_POPTR] (644 aa)
     
  0.868
POPTR_0003s19810.1
Uridine 5’-monophosphate synthase family protein (452 aa)
       
      0.769
POPTR_0001s06360.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHV8_POPTR] (475 aa)
       
      0.769
POPTR_0001s22140.1
Predicted protein (981 aa)
     
      0.748
POPTR_0007s12130.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HEL3_POPTR] (1517 aa)
       
  0.715
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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